PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30131.m007187
Common NameLOC8270873, RCOM_1452410
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family SRS
Protein Properties Length: 280aa    MW: 30282.5 Da    PI: 8.5497
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30131.m007187genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702184.25.4e-57762374154
         DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssaesk 97 
                     +  C+dCGn+akk+C+++RCRtCCksrg+dCathvkstWv+aa+rrer+         ++ s+      +kr+re+ ++++++ls++  ++  ++
  30131.m007187  76 SSRVCRDCGNRAKKECEFRRCRTCCKSRGYDCATHVKSTWVSAARRRERHGGDGGGGGGSSGSSsgGGGGTKRPRENVTATSNSLSTS-NNNVAAS 170
                    5678*********************************************887776655544444346778888888744443333333.3344444 PP

         DUF702  98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     +++t s          lP++v+++avfrc+rv++++ ge e++Yq+ v+i+Gh+fkG+LydqG+++
  30131.m007187 171 FSFDTGSnyqdasfkqcLPSQVRAPAVFRCIRVTAINGGEPEVGYQAMVNISGHLFKGFLYDQGIDK 237
                    45555557888999999***********************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.0E-5478236IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016235.7E-2679121IPR006510Zinc finger, lateral root primordium type 1
Gene3DG3DSA:2.30.27.108.6E-4107162No hitNo description
TIGRFAMsTIGR016241.5E-24188235IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MLGLHNILLI APPPSSSAPF HQQQITNIND QCNISNNQDA WTALKRYQQE SCFAKKDALS  60
IVDHEDNIEN DNSNSSSRVC RDCGNRAKKE CEFRRCRTCC KSRGYDCATH VKSTWVSAAR  120
RRERHGGDGG GGGGSSGSSS GGGGGTKRPR ENVTATSNSL STSNNNVAAS FSFDTGSNYQ  180
DASFKQCLPS QVRAPAVFRC IRVTAINGGE PEVGYQAMVN ISGHLFKGFL YDQGIDKKNL  240
FPCISKMPSS ERNRDSTSPI LDPPAAYTAS GSQRLLQGNE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513050.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 isoform X4
SwissprotQ94CK92e-52LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLB9RG980.0B9RG98_RICCO; Transcription factor, putative
STRINGPOPTR_0001s06500.11e-119(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.22e-51Lateral root primordium (LRP) protein-related